Building on clete.caelum.ci.dev
(from ocaml/opam:debian-unstable)
Unable to find image 'ocaml/opam:debian-unstable' locally
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Digest: sha256:215d78cea03ed28969926c5e696b68d631be333be3e2b3e86a048d1da602d241
Status: Downloaded newer image for ocaml/opam:debian-unstable
2025-08-11 15:47.33 ---> using "0acd5aeaa8f7bc314514d9795d14a7f12ec72a6a5b11c5904350189734c6859b" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (env CI true)
/: (env OPAM_HEALTH_CHECK_CI true)
/: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2025-08-11 15:47.33 ---> using "40df4fa4cdfc68a5fa7a326047e82a7adc5df52b8059d4a7b745bdd50aad56e7" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q 854fc71d55ce63c2ce04935106fe0551861f9a39"))
2025-08-11 15:47.33 ---> using "475916120a5e8bdd46d5bf720fb18956c4e33cacc85007945b14f932636914ee" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare --config ~/.opamrc-sandbox ~/opam-repository"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
2025-08-11 15:47.33 ---> using "9be99d11144cc1a35d40ac27ad0f9322c1e9cd078064bb7137a66028612eb814" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune)))
(network host)
(shell "opam switch create --repositories=default '5.3-opam' '5.3.0'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "5.3.0"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved ocaml-config.3 (cached)
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed ocaml-options-vanilla.1
-> retrieved ocaml-compiler.5.3.0 (cached)
-> installed ocaml-compiler.5.3.0
-> installed ocaml-base-compiler.5.3.0
-> installed ocaml-config.3
-> installed ocaml.5.3.0
-> installed base-domains.base
-> installed base-effects.base
-> installed base-nnp.base
Done.
# To update the current shell environment, run: eval $(opam env --switch=5.3-opam)
2025-08-11 15:47.33 ---> using "b9fcdb3ea6c521a476456b374999641423e11455d71ed9962c683d63e24f241d" from cache
/: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian unstable InRelease [216 kB]
- Get:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-08-11-0818.03-F-2025-08-09-1855.42.pdiff [283 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-08-11-0818.03-F-2025-08-09-1855.42.pdiff [283 kB]
- Fetched 562 kB in 3s (191 kB/s)
- Reading package lists...
-
2025-08-11 15:47.33 ---> using "ae9398ef5a2cbea98741e4c1fc188ccf6f9cbafdc909f5d707d3bf1a05297c76" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune)))
(network host)
(shell "opam pin add -k version dune $(opam show -f version dune)"))
dune is now pinned to version 3.19.1
The following actions will be performed:
=== install 1 package
- install dune 3.19.1 (pinned)
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved dune.3.19.1 (cached)
-> installed dune.3.19.1
Done.
# To update the current shell environment, run: eval $(opam env)
2025-08-11 15:47.33 ---> using "d61dddc75f3540a1266573579489b25149345e987938e9ad2c4ab34791d06a66" from cache
/: (env DUNE_CACHE enabled)
/: (env DUNE_CACHE_TRANSPORT direct)
/: (env DUNE_CACHE_DUPLICATION copy)
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune)))
(network host)
(shell "opam remove -y orxgboost.1.2.0\
\nopam install -vy orxgboost.1.2.0\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: orxgboost.1.2.0 | grep -q 'debian-unstable'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi \
\n\
\n\
\nexit $res"))
[NOTE] orxgboost.1.2.0 is not installed.
Nothing to do.
The following actions will be performed:
=== install 2 packages
- install conf-r 1.0.0 [required by orxgboost]
- install orxgboost 1.2.0
The following system packages will first need to be installed:
r-base-core
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "r-base-core"
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- Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
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- Adding 'diversion of /usr/bin/luit to /usr/bin/luit.x11-utils by luit'
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- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libncurses-dev:amd64 (6.5+20250216-2) ...
- Setting up libfile-basedir-perl (0.09-2) ...
- Setting up libfile-listing-perl (6.16-1) ...
- Setting up libpcre2-dev:amd64 (10.45-1) ...
- Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ...
- Setting up libpng-tools (1.6.50-1) ...
- Setting up fontconfig-config (2.15.0-2.3) ...
- Setting up libxtst6:amd64 (2:1.2.5-1) ...
- Setting up libauthen-sasl-perl (2.1900-1) ...
- Setting up libxcursor1:amd64 (1:1.2.3-1) ...
- Setting up libpng-dev:amd64 (1.6.50-1) ...
- Setting up libjpeg-dev:amd64 (1:2.1.5-4) ...
- Setting up libnet-http-perl (6.23-1) ...
- Setting up dbus-daemon (1.16.2-2) ...
- Setting up libpaper-utils (2.2.5-0.3+b2) ...
- Setting up pkgconf:amd64 (1.8.1-4) ...
- Setting up libthai0:amd64 (0.1.29-2+b1) ...
- Setting up libglib2.0-0t64:amd64 (2.84.4-1) ...
- No schema files found: doing nothing.
- Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ...
- Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
- Setting up dbus (1.16.2-2) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of start.
- Setting up shared-mime-info (2.4-5+b2) ...
- Setting up liblapack-dev:amd64 (3.12.1-6) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
- Setting up icu-devtools (76.1-4) ...
- Setting up ucf (3.0052) ...
- Setting up libfile-desktopentry-perl (0.22-3) ...
- Setting up libreadline8t64:amd64 (8.2-6) ...
- Setting up libwww-robotrules-perl (6.02-1) ...
- Setting up libdrm2:amd64 (2.4.124-2) ...
- Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ...
- Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ...
- Setting up libfontconfig1:amd64 (2.15.0-2.3) ...
- Setting up libgcc-14-dev:amd64 (14.3.0-5) ...
- Setting up libstdc++-14-dev:amd64 (14.3.0-5) ...
- Setting up libsm6:amd64 (2:1.2.6-1) ...
- Setting up libicu-dev:amd64 (76.1-4) ...
- Setting up libio-socket-ssl-perl (2.089-1) ...
- Setting up libhttp-message-perl (7.00-2) ...
- Setting up libdrm-amdgpu1:amd64 (2.4.124-2) ...
- Setting up libhtml-form-perl (6.12-1) ...
- Setting up libgfortran-14-dev:amd64 (14.3.0-5) ...
- Setting up mesa-vulkan-drivers:amd64 (25.0.7-2) ...
- Setting up libfile-mimeinfo-perl (0.35-1) ...
- Setting up libhttp-negotiate-perl (6.01-2) ...
- Setting up fontconfig (2.15.0-2.3) ...
- Regenerating fonts cache...
- done.
- Setting up libxft2:amd64 (2.3.6-1+b4) ...
- Setting up libhttp-cookies-perl (6.11-1) ...
- Setting up libhtml-tree-perl (5.07-3) ...
- Setting up libtk8.6:amd64 (8.6.16-1) ...
- Setting up libpango-1.0-0:amd64 (1.56.3-1) ...
- Setting up libdrm-intel1:amd64 (2.4.124-2) ...
- Setting up libhtml-format-perl (2.16-2) ...
- Setting up libreadline-dev:amd64 (8.2-6) ...
- Setting up libcairo2:amd64 (1.18.4-1+b1) ...
- Setting up libnet-smtp-ssl-perl (1.04-2) ...
- Setting up libmailtools-perl (2.22-1) ...
- Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
- Setting up libhttp-daemon-perl (6.16-1) ...
- Setting up gcc-14-x86-64-linux-gnu (14.3.0-5) ...
- Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ...
- Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ...
- Setting up mesa-libgallium:amd64 (25.0.7-2) ...
- Setting up libxmu6:amd64 (2:1.1.3-3+b4) ...
- Setting up libgbm1:amd64 (25.0.7-2) ...
- Setting up libgl1-mesa-dri:amd64 (25.0.7-2) ...
- Setting up libxaw7:amd64 (2:1.0.16-1) ...
- Setting up x11-xserver-utils (7.7+11) ...
- Setting up gcc-14 (14.3.0-5) ...
- Setting up gfortran-14-x86-64-linux-gnu (14.3.0-5) ...
- Setting up libegl-mesa0:amd64 (25.0.7-2) ...
- Setting up r-base-core (4.5.1-1) ...
- Creating config file /etc/R/Renviron with new version
- Setting up r-cran-lattice (0.22-7-1) ...
- Setting up r-cran-nlme (3.1.168-1) ...
- Setting up g++-14-x86-64-linux-gnu (14.3.0-5) ...
- Setting up r-cran-cluster (2.1.8.1-1) ...
- Setting up libegl1:amd64 (1.7.0-1+b2) ...
- Setting up r-cran-nnet (7.3-20-1) ...
- Setting up g++-14 (14.3.0-5) ...
- Setting up gfortran-14 (14.3.0-5) ...
- Setting up r-cran-codetools (0.2-20-1) ...
- Setting up r-cran-boot (1.3-31-1) ...
- Setting up libglx-mesa0:amd64 (25.0.7-2) ...
- Setting up libglx0:amd64 (1.7.0-1+b2) ...
- Setting up r-cran-spatial (7.3-18-1) ...
- Setting up r-cran-mass (7.3-65-1) ...
- Setting up r-cran-foreign (0.8.90-1) ...
- Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ...
- Setting up gfortran (4:14.2.0-1) ...
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
- Setting up libgl1:amd64 (1.7.0-1+b2) ...
- Setting up r-cran-matrix (1.7-3-1) ...
- Setting up r-cran-kernsmooth (2.23-26-1) ...
- Setting up zutty (0.16.2.20241020+dfsg1-1) ...
- update-alternatives: using /usr/bin/zutty to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
- Setting up r-cran-mgcv (1.9-3-1) ...
- Setting up x11-utils (7.7+7) ...
- Setting up r-base-dev (4.5.1-1) ...
- Setting up r-cran-class (7.3-23-1) ...
- Setting up r-cran-survival (3.8-3-1) ...
- Setting up r-cran-rpart (4.1.24-1) ...
- Setting up r-recommended (4.5.1-1) ...
- Setting up liblwp-protocol-https-perl (6.14-1) ...
- Setting up libwww-perl (6.78-1) ...
- Setting up libxml-parser-perl (2.47-1+b3) ...
- Setting up libxml-twig-perl (1:3.52-3) ...
- Setting up libnet-dbus-perl (1.2.0-2+b3) ...
- Processing triggers for libc-bin (2.41-12) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved conf-r.1.0.0 (cached)
Processing 2/6: [orxgboost.1.2.0: extract]
Processing 3/6: [orxgboost.1.2.0: extract] [conf-r: R CMD]
-> retrieved orxgboost.1.2.0 (cached)
Processing 3/6: [conf-r: R CMD]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "R" "CMD" "BATCH" "check.r" (CWD=/home/opam/.opam/5.3-opam/.opam-switch/build/conf-r.1.0.0)
-> compiled conf-r.1.0.0
-> installed conf-r.1.0.0
Processing 5/6: [orxgboost: R CMD]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "R" "CMD" "BATCH" "install_matrix.r" (CWD=/home/opam/.opam/5.3-opam/.opam-switch/build/orxgboost.1.2.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "R" "CMD" "BATCH" "install_xgboost.r" (CWD=/home/opam/.opam/5.3-opam/.opam-switch/build/orxgboost.1.2.0)
[ERROR] The compilation of orxgboost.1.2.0 failed at "R CMD BATCH install_xgboost.r".
#=== ERROR while compiling orxgboost.1.2.0 ====================================#
# context 2.4.1 | linux/x86_64 | ocaml-base-compiler.5.3.0 | file:///home/opam/opam-repository
# path ~/.opam/5.3-opam/.opam-switch/build/orxgboost.1.2.0
# command ~/.opam/opam-init/hooks/sandbox.sh build R CMD BATCH install_xgboost.r
# exit-code 1
# env-file ~/.opam/log/orxgboost-8-afceea.env
# output-file ~/.opam/log/orxgboost-8-afceea.out
<><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
+- The following actions failed
| - build orxgboost 1.2.0
+-
+- The following changes have been performed
| - install conf-r 1.0.0
+-
<><> orxgboost.1.2.0 troubleshooting ><><><><><><><><><><><><><><><><><><><><><>
=> Please interact with R to install needed things in user-space:
R
install.packages('Marix', repos='http://cran.r-project.org')
install.packages('xgboost', repos='http://cran.r-project.org')
# To update the current shell environment, run: eval $(opam env)
The former state can be restored with:
/usr/bin/opam switch import "/home/opam/.opam/5.3-opam/.opam-switch/backup/state-20250811154734.export"
'opam install -vy orxgboost.1.2.0' failed.
This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.
"/usr/bin/env" "bash" "-c" "opam remove -y orxgboost.1.2.0
opam install -vy orxgboost.1.2.0
res=$?
if [ $res = 31 ]; then
if opam show -f x-ci-accept-failures: orxgboost.1.2.0 | grep -q 'debian-unstable'; then
echo "This package failed and has been disabled for CI using the 'x-ci-accept-failures' field."
exit 69
fi
fi
exit $res" failed with exit status 69
Failed: Build failed
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