Building on x86-bm-c9.sw.ocaml.org
(from ocaml/opam:debian-unstable)
Unable to find image 'ocaml/opam:debian-unstable' locally
debian-unstable: Pulling from ocaml/opam
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Digest: sha256:d566aebdbe5296cf14b3f26a3c52fbcf1f1c4ebf5a986e6a1c6c95da3fd3bf7c
Status: Downloaded newer image for ocaml/opam:debian-unstable
2025-03-07 13:24.43 ---> using "0acd5aeaa8f7bc314514d9795d14a7f12ec72a6a5b11c5904350189734c6859b" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (env CI true)
/: (env OPAM_HEALTH_CHECK_CI true)
/: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2025-03-07 13:24.43 ---> using "40df4fa4cdfc68a5fa7a326047e82a7adc5df52b8059d4a7b745bdd50aad56e7" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q 862a7640b194b6ef60dc2d24341920e48dd021fe"))
2025-03-07 13:24.43 ---> using "60bf8bf619037178d11c43c4668d6e1d6a66962e4c98cafc7e1e44b72e1ca096" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare --config ~/.opamrc-sandbox ~/opam-repository"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
2025-03-07 13:24.43 ---> using "0e7bfb73d90f64fc5165c1534214ae6122f677bcbc093f353664b69acd373307" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune)))
(network host)
(shell "opam switch create --repositories=default '5.3' '5.3.0'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "5.3.0"} | "ocaml-system" {= "5.3.0"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved ocaml-config.3 (cached)
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed ocaml-options-vanilla.1
-> retrieved ocaml-compiler.5.3.0 (cached)
-> installed ocaml-compiler.5.3.0
-> installed ocaml-base-compiler.5.3.0
-> installed ocaml-config.3
-> installed ocaml.5.3.0
-> installed base-domains.base
-> installed base-effects.base
-> installed base-nnp.base
Done.
# To update the current shell environment, run: eval $(opam env --switch=5.3)
2025-03-07 13:24.43 ---> using "44b5594daa67dac5f4fc296d885aea2d7af4ab990a63cb1978768b7a517b0f35" from cache
/: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian unstable InRelease [205 kB]
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- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-03-07-0807.56-F-2025-03-02-1408.49.pdiff [424 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-03-07-0807.56-F-2025-03-02-1408.49.pdiff [424 kB]
- Fetched 692 kB in 3s (247 kB/s)
- Reading package lists...
-
2025-03-07 13:24.43 ---> using "3ef1e55ec7f8782c317ae797c6470318ace127bb749f8aa58c737eadb996d34d" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune)))
(network host)
(shell "opam pin add -k version dune $(opam show -f version dune)"))
dune is now pinned to version 3.17.2
The following actions will be performed:
=== install 1 package
- install dune 3.17.2 (pinned)
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved dune.3.17.2 (cached)
-> installed dune.3.17.2
Done.
# To update the current shell environment, run: eval $(opam env)
2025-03-07 13:24.43 ---> using "8d66610464de6d4fa5a84855f55403cc052d6fa491cfea5e375527669790a80c" from cache
/: (env DUNE_CACHE enabled)
/: (env DUNE_CACHE_TRANSPORT direct)
/: (env DUNE_CACHE_DUPLICATION copy)
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune)))
(network host)
(shell "curl -fsSL https://get.dune.build/install | sh"))
#=#=#
##O#-#
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dune x86_64-unknown-linux-musl was installed successfully to ~/.local/bin/dune
To use dune you will need to source the file "$HOME/.local/share/dune/env/env.bash" (or similar as appropriate for your shell)
export PATH="/home/opam/.local/bin:$PATH"
To get started, run:
dune --help
2025-03-07 13:24.43 ---> using "c02e58fe297321b6d95e1895b94ae5d442201572a70bcd10877952081e58a9e4" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune)))
(network host)
(shell "sudo apt-get install -y python3-sexpdata && echo 'import sexpdata\
\nwith open(\"dune-project\", \"r\") as f:\
\n content = [i for i in sexpdata.loads(\"(\" + f.read() + \")\") if not i[0] == sexpdata.Symbol(\"package\")]\
\n print(sexpdata.dumps(content[0]))\
\n for i in content[1:]:\
\n print(sexpdata.dumps(i))' > /tmp/opam-health-check-remove-package.py"))
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib media-types
python3 python3-minimal python3.13 python3.13-minimal
Suggested packages:
python3-doc python3-tk python3-venv python3.13-venv python3.13-doc
binfmt-support
The following NEW packages will be installed:
libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib media-types
python3 python3-minimal python3-sexpdata python3.13 python3.13-minimal
0 upgraded, 9 newly installed, 0 to remove and 31 not upgraded.
Need to get 5893 kB of archives.
After this operation, 23.1 MB of additional disk space will be used.
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Get:2 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB]
Get:3 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB]
Get:4 http://deb.debian.org/debian unstable/main amd64 media-types all 12.0.0 [28.9 kB]
Get:5 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB]
Get:6 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.2-1 [745 kB]
Get:7 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB]
Get:8 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.2-2 [28.1 kB]
Get:9 http://deb.debian.org/debian unstable/main amd64 python3-sexpdata all 1.0.2-1 [9940 B]
Fetched 5893 kB in 0s (70.1 MB/s)
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running python rtupdate hooks for python3.13...
running python post-rtupdate hooks for python3.13...
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2025-03-07 13:24.43 ---> using "641693f986079688faa547bc6a553fcfe2db9e7b91353eac819c1bc20a34652b" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune)))
(network host)
(shell "PLACE=$(mktemp -d) && cd $PLACE && echo '(lang dune 3.17)\
\n(package\
\n (name dummy)\
\n (allow_empty true)\
\n (depends (ocaml (= 5.3.0))))' > dune-project && PATH=$HOME/.local/bin:$PATH dune pkg lock && PATH=$HOME/.local/bin:$PATH dune build"))
Solution for dune.lock:
- ocaml.5.3.0
- ocaml-base-compiler.5.3.0
- ocaml-compiler.5.3.0
- ocaml-config.3
Downloading ocaml-compiler.5.3.0
Building ocaml-compiler.5.3.0
Building ocaml-base-compiler.5.3.0
2025-03-07 13:24.43 ---> using "5eff19f0250fc3da06e7081e5169d1710bb61a7b32b955ce187f4bce1879693f" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune)))
(network host)
(shell "cd $HOME && opam source fasmifra.1.1.0 && cd fasmifra.1.1.0 && if [ -f opam ]; then mv opam fasmifra.opam; fi && for opam in *.opam; do opam show --raw ${opam%.opam} > $opam; done && opam install ./ --depext-only --with-test --with-doc && for opam in *.opam; do rm $opam; echo ${opam%.opam} >> /tmp/packages-locally-available; done && opam show --raw fasmifra.1.1.0 > fasmifra.opam && python3 /tmp/opam-health-check-remove-package.py > dune-project-new && mv dune-project-new dune-project && sudo apt-get remove -y python3-sexpdata && sudo apt-get autoremove -y && echo '(lang dune 3.17)\
\n(lock_dir\
\n (repositories overlay default))\
\n\
\n(repository\
\n (name default)\
\n (url \"file:///home/opam/opam-repository\"))\
\n\
\n\
\n' > dune-workspace && PATH=$HOME/.local/bin:$PATH dune pkg lock &> /tmp/packages-wanted || true && echo fasmifra >> /tmp/packages-to-build && while read package ; do if grep --quiet $package /tmp/packages-wanted ; then echo $package >> /tmp/packages-to-build ; fi ; done < /tmp/packages-locally-available && while read package ; do opam show --raw $package > $package.opam; done < /tmp/packages-to-build && while read package ; do if [ ! -f ${package}.opam ]; then echo \"opam-version: \\\"2.0\\\"\" > ${package}.opam; fi; done < /tmp/packages-locally-available && paste -s -d , /tmp/packages-to-build > /tmp/packages-for-dune && PATH=$HOME/.local/bin:$PATH dune pkg lock && grep -v dependency_hash dune.lock/lock.dune > /tmp/lock.dune && mv /tmp/lock.dune dune.lock/lock.dune && PATH=$HOME/.local/bin:$PATH dune build --profile=release --only-packages $(cat /tmp/packages-for-dune) || (echo \"opam-health-check: Build failed\" && exit 1)"))
Successfully extracted to /home/opam/fasmifra.1.1.0
The following system packages will first need to be installed:
autoconf librdkit-dev python3-rdkit
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "librdkit-dev" "python3-rdkit"
- Preconfiguring packages ...
- Selecting previously unselected package python3-numpy-dev:amd64.
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- Unpacking fonts-dejavu-mono (2.37-8) ...
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- Selecting previously unselected package libinchi1.07.
- Preparing to unpack .../26-libinchi1.07_1.07.3+dfsg-1_amd64.deb ...
- Unpacking libinchi1.07 (1.07.3+dfsg-1) ...
- Selecting previously unselected package libmaeparser1:amd64.
- Preparing to unpack .../27-libmaeparser1_1.3.1-1+b2_amd64.deb ...
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- Unpacking librdkit1t64 (202409.6-1) ...
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- Preparing to unpack .../31-python3-rdkit_202409.6-1_amd64.deb ...
- Unpacking python3-rdkit (202409.6-1) ...
- Setting up libboost-python1.83.0 (1.83.0-4.1+b1) ...
- Setting up libpixman-1-0:amd64 (0.44.0-3) ...
- Setting up libxrender1:amd64 (1:0.9.10-1.1+b4) ...
- Setting up libxcb-render0:amd64 (1.17.0-2+b1) ...
- Setting up fonts-freefont-ttf (20211204+svn4273-2) ...
- Setting up m4 (1.4.19-7) ...
- Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ...
- Setting up rdkit-data (202409.6-1) ...
- Setting up libboost-serialization1.83.0:amd64 (1.83.0-4.1+b1) ...
- Setting up libboost-numpy1.83.0 (1.83.0-4.1+b1) ...
- Setting up autotools-dev (20220109.1) ...
- Setting up libblas3:amd64 (3.12.1-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4.1+b1) ...
- Setting up fonts-dejavu-mono (2.37-8) ...
- Setting up libpng16-16t64:amd64 (1.6.47-1) ...
- Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-4) ...
- Setting up fonts-dejavu-core (2.37-8) ...
- Setting up libgfortran5:amd64 (14.2.0-17) ...
- Setting up autoconf (2.72-3) ...
- Setting up libcoordgen3:amd64 (3.0.2-1+b2) ...
- Setting up libinchi1.07 (1.07.3+dfsg-1) ...
- Setting up automake (1:1.17-3) ...
- update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
- Setting up liblapack3:amd64 (3.12.1-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up fontconfig-config (2.15.0-2) ...
- Setting up libmaeparser1:amd64 (1.3.1-1+b2) ...
- Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
- Setting up python3-numpy (1:2.2.3+ds-4) ...
- Setting up libfontconfig1:amd64 (2.15.0-2) ...
- Setting up libcairo2:amd64 (1.18.2-2) ...
- Setting up librdkit1t64 (202409.6-1) ...
- Setting up python3-rdkit (202409.6-1) ...
- Setting up librdkit-dev (202409.6-1) ...
- Processing triggers for libc-bin (2.41-3) ...
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
python3-sexpdata
0 upgraded, 0 newly installed, 1 to remove and 31 not upgraded.
After this operation, 46.1 kB disk space will be freed.
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(Reading database ... 23419 files and directories currently installed.)
Removing python3-sexpdata (1.0.2-1) ...
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 31 not upgraded.
Solution for dune.lock:
- base-unix.base
- batteries.3.9.0
- camlp-streams.5.0.1
- conf-autoconf.0.2
- conf-python-3.9.0.0
- conf-rdkit.1
- cpu.2.0.0
- dolog.6.0.0
- line_oriented.1.3.0
- minicli.5.0.2
- num.1.5-1
- ocaml.5.3.0
- ocaml-base-compiler.5.3.0
- ocaml-compiler.5.3.0
- ocaml-config.3
- ocamlfind.1.9.8+dune
- parany.12.2.2
Downloading ocaml-compiler.5.3.0
Building ocaml-compiler.5.3.0
Building ocaml-base-compiler.5.3.0
Building base-unix.base
Building conf-autoconf.0.2
Building ocaml-config.3
Building ocaml.5.3.0
Downloading cpu.2.0.0
Building cpu.2.0.0
Downloading parany.12.2.2
Building parany.12.2.2
Downloading minicli.5.0.2
Building minicli.5.0.2
Downloading num.1.5-1
Building num.1.5-1
Downloading ocamlfind.1.9.8+dune
Building ocamlfind.1.9.8+dune
Downloading camlp-streams.5.0.1
Building camlp-streams.5.0.1
Downloading batteries.3.9.0
Building batteries.3.9.0
Downloading line_oriented.1.3.0
Building line_oriented.1.3.0
Downloading dolog.6.0.0
Building dolog.6.0.0
Building conf-rdkit.1
Error:
execve(../../../../../../../_private/default/.pkg/conf-rdkit/source/test): No such file or directory
-> required by _build/_private/default/.pkg/conf-rdkit/target
-> required by alias default
opam-health-check: Build failed
"/usr/bin/env" "bash" "-c" "cd $HOME && opam source fasmifra.1.1.0 && cd fasmifra.1.1.0 && if [ -f opam ]; then mv opam fasmifra.opam; fi && for opam in *.opam; do opam show --raw ${opam%.opam} > $opam; done && opam install ./ --depext-only --with-test --with-doc && for opam in *.opam; do rm $opam; echo ${opam%.opam} >> /tmp/packages-locally-available; done && opam show --raw fasmifra.1.1.0 > fasmifra.opam && python3 /tmp/opam-health-check-remove-package.py > dune-project-new && mv dune-project-new dune-project && sudo apt-get remove -y python3-sexpdata && sudo apt-get autoremove -y && echo '(lang dune 3.17)
(lock_dir
(repositories overlay default))
(repository
(name default)
(url "file:///home/opam/opam-repository"))
' > dune-workspace && PATH=$HOME/.local/bin:$PATH dune pkg lock &> /tmp/packages-wanted || true && echo fasmifra >> /tmp/packages-to-build && while read package ; do if grep --quiet $package /tmp/packages-wanted ; then echo $package >> /tmp/packages-to-build ; fi ; done < /tmp/packages-locally-available && while read package ; do opam show --raw $package > $package.opam; done < /tmp/packages-to-build && while read package ; do if [ ! -f ${package}.opam ]; then echo "opam-version: \"2.0\"" > ${package}.opam; fi; done < /tmp/packages-locally-available && paste -s -d , /tmp/packages-to-build > /tmp/packages-for-dune && PATH=$HOME/.local/bin:$PATH dune pkg lock && grep -v dependency_hash dune.lock/lock.dune > /tmp/lock.dune && mv /tmp/lock.dune dune.lock/lock.dune && PATH=$HOME/.local/bin:$PATH dune build --profile=release --only-packages $(cat /tmp/packages-for-dune) || (echo "opam-health-check: Build failed" && exit 1)" failed with exit status 1
Failed: Build failed
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