Building on x86-bm-c9.sw.ocaml.org
(from ocaml/opam:debian-unstable)
Unable to find image 'ocaml/opam:debian-unstable' locally
debian-unstable: Pulling from ocaml/opam
63563b31af74: Pulling fs layer
63563b31af74: Verifying Checksum
63563b31af74: Download complete
63563b31af74: Pull complete
Digest: sha256:8f6038a9795a3c7cc61b90b742e29558b247d69f92f73dea67cb146602ff83f6
Status: Downloaded newer image for ocaml/opam:debian-unstable
2025-02-26 16:32.54 ---> using "0acd5aeaa8f7bc314514d9795d14a7f12ec72a6a5b11c5904350189734c6859b" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (env CI true)
/: (env OPAM_HEALTH_CHECK_CI true)
/: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2025-02-26 16:32.54 ---> using "40df4fa4cdfc68a5fa7a326047e82a7adc5df52b8059d4a7b745bdd50aad56e7" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q 1d1ea2841b231665859c831a77400c2a4deca6f4"))
2025-02-26 16:32.54 ---> using "26edb71e033f6c021f6aed95c1cf22939c08a231a2cfa0c24b2281bd33145e5b" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare --config ~/.opamrc-sandbox ~/opam-repository"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
2025-02-26 16:32.54 ---> using "7efb7ea393cd4e7ff32d44e82f396eb5cc6c9809cf13925aba37e1c16f0b7883" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune)))
(network host)
(shell "opam switch create --repositories=default '5.3' '5.3.0'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "5.3.0"} | "ocaml-system" {= "5.3.0"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved ocaml-config.3 (cached)
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed ocaml-options-vanilla.1
-> retrieved ocaml-compiler.5.3.0 (cached)
-> installed ocaml-compiler.5.3.0
-> installed ocaml-base-compiler.5.3.0
-> installed ocaml-config.3
-> installed ocaml.5.3.0
-> installed base-domains.base
-> installed base-effects.base
-> installed base-nnp.base
Done.
# To update the current shell environment, run: eval $(opam env --switch=5.3)
2025-02-26 16:32.54 ---> using "6f34e16995c41c70096e87e00a56b840c5bd411732eaed9a31d1d27d4aa092b7" from cache
/: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian unstable InRelease [205 kB]
- Get:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-02-26-1409.51-F-2025-02-16-2015.54.pdiff [736 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-02-26-1409.51-F-2025-02-16-2015.54.pdiff [736 kB]
- Fetched 1005 kB in 3s (315 kB/s)
- Reading package lists...
2025-02-26 16:32.54 ---> using "aefe02236694bbca29d5399b52c171b3e709ce4000a4b1d337be35d95012d1d1" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune)))
(network host)
(shell "opam pin add -k version dune $(opam show -f version dune)"))
dune is now pinned to version 3.17.2
The following actions will be performed:
=== install 1 package
- install dune 3.17.2 (pinned)
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved dune.3.17.2 (cached)
-> installed dune.3.17.2
Done.
# To update the current shell environment, run: eval $(opam env)
2025-02-26 16:32.54 ---> using "6e7e7e53f3fd027e0377dd6c15485e2e927e9622397364a79382a99c5a5ff57c" from cache
/: (env DUNE_CACHE enabled)
/: (env DUNE_CACHE_TRANSPORT direct)
/: (env DUNE_CACHE_DUPLICATION copy)
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune)))
(network host)
(shell "curl -fsSL https://get.dune.build/install | sh"))
#=#=#
##O#-#
0.1%
# 1.4%
#### 6.2%
################### 26.9%
################################################################### 94.2%
######################################################################## 100.0%
dune x86_64-unknown-linux-musl was installed successfully to ~/.local/bin/dune
To use dune you will need to source the file "$HOME/.local/share/dune/env/env.bash" (or similar as appropriate for your shell)
export PATH="/home/opam/.local/bin:$PATH"
To get started, run:
dune --help
2025-02-26 16:32.54 ---> using "42012678825dcbc35f93596017a63769cc3f22691b6a4c401224c56525dc9509" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune)))
(network host)
(shell "PLACE=$(mktemp -d) && cd $PLACE && echo '(lang dune 3.17)\
\n(package\
\n (name dummy)\
\n (allow_empty true)\
\n (depends (ocaml (= 5.3.0))))' > dune-project && PATH=$HOME/.local/bin:$PATH dune pkg lock && PATH=$HOME/.local/bin:$PATH dune build"))
Solution for dune.lock:
- ocaml.5.3.0
- ocaml-base-compiler.5.3.0
- ocaml-compiler.5.3.0
- ocaml-config.3
Downloading ocaml-compiler.5.3.0
Building ocaml-compiler.5.3.0
Building ocaml-base-compiler.5.3.0
2025-02-26 16:32.54 ---> using "ca7d82ed485937696c077530c449dd14f7d61c86c045c2da95c88f2a973713c4" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune)))
(network host)
(shell "cd $HOME && opam source biotk.0.3 && cd biotk.0.3 && opam install ./ --depext-only --with-test && echo '(lang dune 3.17)\
\n(lock_dir\
\n (repositories overlay default ))\
\n\
\n(repository\
\n (name default)\
\n (url \"git+https://github.com/ocaml/opam-repository.git\"))\
\n\
\n\
\n' > dune-workspace && PATH=$HOME/.local/bin:$PATH dune pkg lock && PATH=$HOME/.local/bin:$PATH dune build"))
Successfully extracted to /home/opam/biotk.0.3
The following system packages will first need to be installed:
libgsl-dev pkg-config zlib1g-dev
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "libgsl-dev" "pkg-config" "zlib1g-dev"
- Selecting previously unselected package libgslcblas0:amd64.
- (Reading database ...
(Reading database ... 5%
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(Reading database ... 19826 files and directories currently installed.)
- Preparing to unpack .../0-libgslcblas0_2.8+dfsg-5_amd64.deb ...
- Unpacking libgslcblas0:amd64 (2.8+dfsg-5) ...
- Selecting previously unselected package libgsl28:amd64.
- Preparing to unpack .../1-libgsl28_2.8+dfsg-5_amd64.deb ...
- Unpacking libgsl28:amd64 (2.8+dfsg-5) ...
- Selecting previously unselected package libgsl-dev.
- Preparing to unpack .../2-libgsl-dev_2.8+dfsg-5_amd64.deb ...
- Unpacking libgsl-dev (2.8+dfsg-5) ...
- Selecting previously unselected package libpkgconf3:amd64.
- Preparing to unpack .../3-libpkgconf3_1.8.1-4_amd64.deb ...
- Unpacking libpkgconf3:amd64 (1.8.1-4) ...
- Selecting previously unselected package pkgconf-bin.
- Preparing to unpack .../4-pkgconf-bin_1.8.1-4_amd64.deb ...
- Unpacking pkgconf-bin (1.8.1-4) ...
- Selecting previously unselected package pkgconf:amd64.
- Preparing to unpack .../5-pkgconf_1.8.1-4_amd64.deb ...
- Unpacking pkgconf:amd64 (1.8.1-4) ...
- Selecting previously unselected package pkg-config:amd64.
- Preparing to unpack .../6-pkg-config_1.8.1-4_amd64.deb ...
- Unpacking pkg-config:amd64 (1.8.1-4) ...
- Selecting previously unselected package zlib1g-dev:amd64.
- Preparing to unpack .../7-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ...
- Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
- Setting up libgslcblas0:amd64 (2.8+dfsg-5) ...
- Setting up libpkgconf3:amd64 (1.8.1-4) ...
- Setting up pkgconf-bin (1.8.1-4) ...
- Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
- Setting up libgsl28:amd64 (2.8+dfsg-5) ...
- Setting up libgsl-dev (2.8+dfsg-5) ...
- Setting up pkgconf:amd64 (1.8.1-4) ...
- Setting up pkg-config:amd64 (1.8.1-4) ...
- Processing triggers for libc-bin (2.40-7) ...
Solution for dune.lock:
- angstrom.0.16.1
- angstrom-unix.0.16.1
- async.v0.17.0
- async_kernel.v0.17.0
- async_log.v0.17.0
- async_rpc_kernel.v0.17.0
- async_unix.v0.17.0
- base.v0.17.1
- base-bigarray.base
- base-threads.base
- base-unix.base
- base_bigstring.v0.17.0
- base_quickcheck.v0.17.0
- bigstringaf.0.10.0
- bin_prot.v0.17.0
- binning.0.0.0
- camlzip.1.13
- capitalization.v0.17.0
- cmdliner.1.3.0
- conf-gsl.2
- conf-pkg-config.4
- conf-zlib.1
- core.v0.17.1
- core_bench.v0.17.0
- core_extended.v0.17.0
- core_kernel.v0.17.0
- core_unix.v0.17.0
- cppo.1.8.0
- crunch.4.0.0
- csexp.1.5.2
- cstruct.6.2.0
- csvfields.v0.17.0
- delimited_parsing.v0.17.0
- dune-configurator.3.17.2
- expect_test_helpers_core.v0.17.0
- fieldslib.v0.17.0
- fmt.0.9.0
- gel.v0.17.0
- gg.1.0.0
- gsl.1.25.1
- int_repr.v0.17.0
- jane-street-headers.v0.17.0
- jst-config.v0.17.0
- num.1.5-1
- ocaml.5.3.0
- ocaml-base-compiler.5.3.0
- ocaml-compiler.5.3.0
- ocaml-compiler-libs.v0.17.0
- ocaml-config.3
- ocaml-syntax-shims.1.0.0
- ocaml_intrinsics_kernel.v0.17.1
- ocamlbuild.0.15.0+dune
- ocamlfind.1.9.8+dune
- otfm.0.4.0
- parsexp.v0.17.0
- ppx_assert.v0.17.0
- ppx_base.v0.17.0
- ppx_bench.v0.17.0
- ppx_bin_prot.v0.17.0
- ppx_cold.v0.17.0
- ppx_compare.v0.17.0
- ppx_conv_func.v0.17.0
- ppx_csv_conv.v0.17.0
- ppx_custom_printf.v0.17.0
- ppx_derivers.1.2.1
- ppx_deriving.6.0.3
- ppx_diff.v0.17.0
- ppx_disable_unused_warnings.v0.17.0
- ppx_enumerate.v0.17.0
- ppx_expect.v0.17.2
- ppx_fields_conv.v0.17.0
- ppx_fixed_literal.v0.17.0
- ppx_globalize.v0.17.0
- ppx_hash.v0.17.0
- ppx_here.v0.17.0
- ppx_ignore_instrumentation.v0.17.0
- ppx_inline_test.v0.17.0
- ppx_jane.v0.17.0
- ppx_let.v0.17.0
- ppx_log.v0.17.0
- ppx_module_timer.v0.17.0
- ppx_optcomp.v0.17.0
- ppx_optional.v0.17.0
- ppx_pipebang.v0.17.0
- ppx_sexp_conv.v0.17.0
- ppx_sexp_message.v0.17.0
- ppx_sexp_value.v0.17.0
- ppx_stable.v0.17.0
- ppx_stable_witness.v0.17.0
- ppx_string.v0.17.0
- ppx_string_conv.v0.17.0
- ppx_tydi.v0.17.0
- ppx_typerep_conv.v0.17.0
- ppx_variants_conv.v0.17.0
- ppxlib.0.35.0
- ppxlib_jane.v0.17.2
- protocol_version_header.v0.17.0
- ptime.1.2.0
- re.1.12.0
- record_builder.v0.17.0
- result.1.5
- rresult.0.7.0
- seq.base
- sexp_pretty.v0.17.0
- sexplib.v0.17.0
- sexplib0.v0.17.0
- spawn.v0.17.0
- splittable_random.v0.17.0
- stdio.v0.17.0
- stdlib-shims.0.3.0
- stringext.1.6.0
- textutils.v0.17.0
- time_now.v0.17.0
- timezone.v0.17.0
- topkg.1.0.7
- typerep.v0.17.1
- tyxml.4.6.0
- uopt.v0.17.0
- uri.4.4.0
- uutf.1.0.3
- variantslib.v0.17.0
- vg.0.9.5
- zlib.0.8
Downloading ocaml-compiler.5.3.0
Building ocaml-compiler.5.3.0
Building ocaml-base-compiler.5.3.0
Building base-bigarray.base
Building conf-pkg-config.4
Building conf-zlib.1
Building ocaml-config.3
Building ocaml.5.3.0
Downloading zlib.0.8
Building zlib.0.8
Downloading cmdliner.1.3.0
Building cmdliner.1.3.0
Downloading ocamlfind.1.9.8+dune
Downloading ocamlbuild.0.15.0+dune
Building ocamlfind.1.9.8+dune
Building ocamlbuild.0.15.0+dune
Downloading topkg.1.0.7
Building topkg.1.0.7
Downloading uutf.1.0.3
Building uutf.1.0.3
Downloading gg.1.0.0
Building gg.1.0.0
Downloading otfm.0.4.0
Building otfm.0.4.0
Downloading vg.0.9.5
Building vg.0.9.5
Building base-unix.base
Downloading ocaml-syntax-shims.1.0.0
Building ocaml-syntax-shims.1.0.0
Downloading stringext.1.6.0
Building stringext.1.6.0
Downloading csexp.1.5.2
Building csexp.1.5.2
Downloading dune-configurator.3.17.2
Building dune-configurator.3.17.2
Downloading bigstringaf.0.10.0
Building bigstringaf.0.10.0
Downloading angstrom.0.16.1
Building angstrom.0.16.1
Downloading uri.4.4.0
Building uri.4.4.0
Building seq.base
Downloading re.1.12.0
Building re.1.12.0
Downloading tyxml.4.6.0
Building tyxml.4.6.0
Downloading rresult.0.7.0
Building rresult.0.7.0
Downloading result.1.5
Building result.1.5
Downloading cppo.1.8.0
Building cppo.1.8.0
Downloading ppx_derivers.1.2.1
Building ppx_derivers.1.2.1
Downloading ocaml-compiler-libs.v0.17.0
Building ocaml-compiler-libs.v0.17.0
Downloading stdlib-shims.0.3.0
Building stdlib-shims.0.3.0
Downloading sexplib0.v0.17.0
Building sexplib0.v0.17.0
Downloading ppxlib.0.35.0
Building ppxlib.0.35.0
Downloading ppx_deriving.6.0.3
Building ppx_deriving.6.0.3
Downloading ocaml_intrinsics_kernel.v0.17.1
Building ocaml_intrinsics_kernel.v0.17.1
Downloading num.1.5-1
Building num.1.5-1
Downloading ppx_ignore_instrumentation.v0.17.0
Downloading jane-street-headers.v0.17.0
Building jane-street-headers.v0.17.0
Downloading parsexp.v0.17.0
Downloading ppxlib_jane.v0.17.2
Building parsexp.v0.17.0
Downloading ppx_pipebang.v0.17.0
Building ppx_ignore_instrumentation.v0.17.0
Building ppxlib_jane.v0.17.2
Building ppx_pipebang.v0.17.0
Downloading base.v0.17.1
Building base.v0.17.1
Downloading sexplib.v0.17.0
Building sexplib.v0.17.0
Downloading ppx_sexp_conv.v0.17.0
Downloading ppx_globalize.v0.17.0
Downloading ppx_cold.v0.17.0
Downloading variantslib.v0.17.0
Downloading ppx_tydi.v0.17.0
Downloading fieldslib.v0.17.0
Downloading ppx_enumerate.v0.17.0
Downloading ppx_fixed_literal.v0.17.0
Downloading ppx_optional.v0.17.0
Downloading ppx_stable_witness.v0.17.0
Building variantslib.v0.17.0
Downloading stdio.v0.17.0
Downloading ppx_here.v0.17.0
Downloading ppx_compare.v0.17.0
Downloading ppx_disable_unused_warnings.v0.17.0
Downloading typerep.v0.17.1
Building ppx_globalize.v0.17.0
Downloading ppx_conv_func.v0.17.0
Building ppx_sexp_conv.v0.17.0
Building fieldslib.v0.17.0
Building ppx_tydi.v0.17.0
Building ppx_cold.v0.17.0
Building ppx_fixed_literal.v0.17.0
Downloading ppx_stable.v0.17.0
Building ppx_enumerate.v0.17.0
Building ppx_stable_witness.v0.17.0
Building stdio.v0.17.0
Building ppx_optional.v0.17.0
Building ppx_here.v0.17.0
Building typerep.v0.17.1
Building ppx_compare.v0.17.0
Building ppx_disable_unused_warnings.v0.17.0
Building ppx_stable.v0.17.0
Building ppx_conv_func.v0.17.0
Downloading ppx_variants_conv.v0.17.0
Downloading ppx_fields_conv.v0.17.0
Building ppx_variants_conv.v0.17.0
Building ppx_fields_conv.v0.17.0
Downloading ppx_optcomp.v0.17.0
Building ppx_optcomp.v0.17.0
Downloading ppx_typerep_conv.v0.17.0
Building ppx_typerep_conv.v0.17.0
Downloading ppx_let.v0.17.0
Building ppx_let.v0.17.0
Downloading ppx_assert.v0.17.0
Downloading ppx_sexp_value.v0.17.0
Downloading ppx_hash.v0.17.0
Downloading ppx_sexp_message.v0.17.0
Downloading ppx_custom_printf.v0.17.0
Building ppx_assert.v0.17.0
Building ppx_sexp_value.v0.17.0
Building ppx_hash.v0.17.0
Building ppx_sexp_message.v0.17.0
Building ppx_custom_printf.v0.17.0
Downloading ppx_base.v0.17.0
Building ppx_base.v0.17.0
Downloading jst-config.v0.17.0
Building jst-config.v0.17.0
Downloading bin_prot.v0.17.0
Building bin_prot.v0.17.0
Downloading capitalization.v0.17.0
Downloading ppx_string.v0.17.0
Building ppx_string.v0.17.0
Building capitalization.v0.17.0
Downloading time_now.v0.17.0
Building time_now.v0.17.0
Downloading ppx_bin_prot.v0.17.0
Building ppx_bin_prot.v0.17.0
Downloading ppx_string_conv.v0.17.0
Building ppx_string_conv.v0.17.0
Downloading ppx_module_timer.v0.17.0
Downloading ppx_inline_test.v0.17.0
Building ppx_module_timer.v0.17.0
Building ppx_inline_test.v0.17.0
Downloading ppx_expect.v0.17.2
Downloading ppx_bench.v0.17.0
Building ppx_expect.v0.17.2
Building ppx_bench.v0.17.0
Downloading splittable_random.v0.17.0
Building splittable_random.v0.17.0
Downloading ppx_log.v0.17.0
Building ppx_log.v0.17.0
Downloading base_quickcheck.v0.17.0
Building base_quickcheck.v0.17.0
Downloading ppx_jane.v0.17.0
Building ppx_jane.v0.17.0
Downloading gel.v0.17.0
Downloading int_repr.v0.17.0
Building gel.v0.17.0
Building int_repr.v0.17.0
Downloading ppx_diff.v0.17.0
Building ppx_diff.v0.17.0
Downloading base_bigstring.v0.17.0
Building base_bigstring.v0.17.0
Downloading core.v0.17.1
Building core.v0.17.1
Downloading csvfields.v0.17.0
Building csvfields.v0.17.0
Downloading ppx_csv_conv.v0.17.0
Building ppx_csv_conv.v0.17.0
Building conf-gsl.2
Downloading gsl.1.25.1
Building gsl.1.25.1
Downloading ptime.1.2.0
Building ptime.1.2.0
Downloading crunch.4.0.0
Building crunch.4.0.0
Building base-threads.base
Downloading fmt.0.9.0
Building fmt.0.9.0
Downloading uopt.v0.17.0
Downloading timezone.v0.17.0
Downloading sexp_pretty.v0.17.0
Downloading protocol_version_header.v0.17.0
Downloading record_builder.v0.17.0
Downloading spawn.v0.17.0
Building sexp_pretty.v0.17.0
Building uopt.v0.17.0
Building spawn.v0.17.0
Building record_builder.v0.17.0
Building timezone.v0.17.0
Building protocol_version_header.v0.17.0
Downloading cstruct.6.2.0
Building cstruct.6.2.0
Downloading expect_test_helpers_core.v0.17.0
Downloading core_kernel.v0.17.0
Building expect_test_helpers_core.v0.17.0
Building core_kernel.v0.17.0
Downloading async_kernel.v0.17.0
Downloading core_unix.v0.17.0
Building async_kernel.v0.17.0
Building core_unix.v0.17.0
Downloading async_rpc_kernel.v0.17.0
Building async_rpc_kernel.v0.17.0
File "dune.lock/core_unix.pkg", line 4, characters 6-10:
4 | (run dune build -p %{pkg-self:name} -j %{jobs}))
^^^^
Error: Logs for package core_unix
(cd _build/default && /home/opam/.cache/dune/toolchains/ocaml-compiler.5.3.0-23da502d9f7a35404ba47aaa0ec40e91/target/bin/ocamlopt.opt -w -40 -g -I time_float_unix/time_unix/.time_unix.objs/byte -I time_float_unix/time_unix/.time_unix.objs/native -I /home/opam/.cache/dune/toolchains/ocaml-compiler.5.3.0-23da502d9f7a35404ba47aaa0ec40e91/target/lib/ocaml/threads -I /home/opam/.cache/dune/toolchains/ocaml-compiler.5.3.0-23da502d9f7a35404ba47aaa0ec40e91/target/lib/ocaml/unix -I /home/opam/biotk.0.3/_build/_private/default/.pkg/base/target/lib/base -I /home/opam/biotk.0.3/_build/_private/default/.pkg/base/target/lib/base/base_internalhash_types -I /home/opam/biotk.0.3/_build/_private/default/.pkg/base/target/lib/base/md5 -I /home/opam/biotk.0.3/_build/_private/default/.pkg/base/target/lib/base/shadow_stdlib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/base_bigstring/target/lib/base_bigstring -I /home/opam/biotk.0.3/_build/_private/default/.pkg/base_quickcheck/target/lib/base_quickcheck -I /home/opam/biotk.0.3/_build/_private/default/.pkg/base_quickcheck/target/lib/base_quickcheck/ppx_quickcheck/runtime -I /home/opam/biotk.0.3/_build/_private/default/.pkg/bin_prot/target/lib/bin_prot -I /home/opam/biotk.0.3/_build/_private/default/.pkg/bin_prot/target/lib/bin_prot/shape -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core/target/lib/core -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core/target/lib/core/base_for_tests -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core/target/lib/core/command -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core/target/lib/core/filename_base -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core/target/lib/core/heap_block -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core/target/lib/core/univ_map -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core/target/lib/core/validate -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core_kernel/target/lib/core_kernel/caml_threads -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core_kernel/target/lib/core_kernel/caml_unix -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core_kernel/target/lib/core_kernel/flags -I /home/opam/biotk.0.3/_build/_private/default/.pkg/fieldslib/target/lib/fieldslib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/gel/target/lib/gel -I /home/opam/biotk.0.3/_build/_private/default/.pkg/int_repr/target/lib/int_repr -I /home/opam/biotk.0.3/_build/_private/default/.pkg/jane-street-headers/target/lib/jane-street-headers -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ocaml_intrinsics_kernel/target/lib/ocaml_intrinsics_kernel -I /home/opam/biotk.0.3/_build/_private/default/.pkg/parsexp/target/lib/parsexp -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_assert/target/lib/ppx_assert/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_bench/target/lib/ppx_bench/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_compare/target/lib/ppx_compare/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_diff/target/lib/ppx_diff/diffable -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_diff/target/lib/ppx_diff/diffable_cinaps -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_enumerate/target/lib/ppx_enumerate/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_expect/target/lib/ppx_expect/config -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_expect/target/lib/ppx_expect/config_types -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_expect/target/lib/ppx_expect/make_corrected_file -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_expect/target/lib/ppx_expect/runtime -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_hash/target/lib/ppx_hash/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_here/target/lib/ppx_here/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_inline_test/target/lib/ppx_inline_test/config -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_inline_test/target/lib/ppx_inline_test/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_log/target/lib/ppx_log/syntax -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_log/target/lib/ppx_log/types -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_module_timer/target/lib/ppx_module_timer/runtime -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_sexp_conv/target/lib/ppx_sexp_conv/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_stable_witness/target/lib/ppx_stable_witness/runtime -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_stable_witness/target/lib/ppx_stable_witness/stable_witness -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_string/target/lib/ppx_string/runtime -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppxlib/target/lib/ppxlib/print_diff -I /home/opam/biotk.0.3/_build/_private/default/.pkg/sexplib/target/lib/sexplib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/sexplib/target/lib/sexplib/unix -I /home/opam/biotk.0.3/_build/_private/default/.pkg/sexplib0/target/lib/sexplib0 -I /home/opam/biotk.0.3/_build/_private/default/.pkg/spawn/target/lib/spawn -I /home/opam/biotk.0.3/_build/_private/default/.pkg/splittable_random/target/lib/splittable_random -I /home/opam/biotk.0.3/_build/_private/default/.pkg/stdio/target/lib/stdio -I /home/opam/biotk.0.3/_build/_private/default/.pkg/time_now/target/lib/time_now -I /home/opam/biotk.0.3/_build/_private/default/.pkg/timezone/target/lib/timezone -I /home/opam/biotk.0.3/_build/_private/default/.pkg/typerep/target/lib/typerep -I /home/opam/biotk.0.3/_build/_private/default/.pkg/variantslib/target/lib/variantslib -I core_unix/src/.core_unix.objs/byte -I core_unix/src/.core_unix.objs/native -I error_checking_mutex/src/.error_checking_mutex.objs/byte -I error_checking_mutex/src/.error_checking_mutex.objs/native -I signal_unix/src/.signal_unix.objs/byte -I signal_unix/src/.signal_unix.objs/native -I time_float_unix/src/.time_float_unix.objs/byte -I time_float_unix/src/.time_float_unix.objs/native -intf-suffix .ml -no-alias-deps -o time_float_unix/time_unix/.time_unix.objs/native/time_unix.cmx -c -impl time_float_unix/time_unix/time_unix.pp.ml)
File "time_float_unix/time_unix/time_unix.ml", line 1, characters 4-14:
1 | [@@@deprecated "[since 2022-04] Use [Time_float_unix] instead"]
^^^^^^^^^^
Warning 53 [misplaced-attribute]: the "deprecated" attribute cannot appear in this context
File "bigstring_unix/src/dune", line 4, characters 9-29:
4 | (names bigstring_unix_stubs recvmmsg))
^^^^^^^^^^^^^^^^^^^^
(cd _build/default/bigstring_unix/src && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -fPIC -pthread -D_FILE_OFFSET_BITS=64 -fdiagnostics-color=always -g -I /home/opam/.cache/dune/toolchains/ocaml-compiler.5.3.0-23da502d9f7a35404ba47aaa0ec40e91/target/lib/ocaml -I /home/opam/.cache/dune/toolchains/ocaml-compiler.5.3.0-23da502d9f7a35404ba47aaa0ec40e91/target/lib/ocaml/threads -I /home/opam/.cache/dune/toolchains/ocaml-compiler.5.3.0-23da502d9f7a35404ba47aaa0ec40e91/target/lib/ocaml/unix -I /home/opam/biotk.0.3/_build/_private/default/.pkg/base/target/lib/base -I /home/opam/biotk.0.3/_build/_private/default/.pkg/base/target/lib/base/base_internalhash_types -I /home/opam/biotk.0.3/_build/_private/default/.pkg/base/target/lib/base/md5 -I /home/opam/biotk.0.3/_build/_private/default/.pkg/base/target/lib/base/shadow_stdlib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/base_bigstring/target/lib/base_bigstring -I /home/opam/biotk.0.3/_build/_private/default/.pkg/base_quickcheck/target/lib/base_quickcheck -I /home/opam/biotk.0.3/_build/_private/default/.pkg/base_quickcheck/target/lib/base_quickcheck/ppx_quickcheck/runtime -I /home/opam/biotk.0.3/_build/_private/default/.pkg/bin_prot/target/lib/bin_prot -I /home/opam/biotk.0.3/_build/_private/default/.pkg/bin_prot/target/lib/bin_prot/shape -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core/target/lib/core -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core/target/lib/core/base_for_tests -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core/target/lib/core/command -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core/target/lib/core/filename_base -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core/target/lib/core/heap_block -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core/target/lib/core/univ_map -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core/target/lib/core/validate -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core_kernel/target/lib/core_kernel/caml_threads -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core_kernel/target/lib/core_kernel/caml_unix -I /home/opam/biotk.0.3/_build/_private/default/.pkg/core_kernel/target/lib/core_kernel/flags -I /home/opam/biotk.0.3/_build/_private/default/.pkg/fieldslib/target/lib/fieldslib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/gel/target/lib/gel -I /home/opam/biotk.0.3/_build/_private/default/.pkg/int_repr/target/lib/int_repr -I /home/opam/biotk.0.3/_build/_private/default/.pkg/jane-street-headers/target/lib/jane-street-headers -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ocaml_intrinsics_kernel/target/lib/ocaml_intrinsics_kernel -I /home/opam/biotk.0.3/_build/_private/default/.pkg/parsexp/target/lib/parsexp -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_assert/target/lib/ppx_assert/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_bench/target/lib/ppx_bench/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_compare/target/lib/ppx_compare/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_diff/target/lib/ppx_diff/diffable -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_diff/target/lib/ppx_diff/diffable_cinaps -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_enumerate/target/lib/ppx_enumerate/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_expect/target/lib/ppx_expect/config -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_expect/target/lib/ppx_expect/config_types -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_expect/target/lib/ppx_expect/make_corrected_file -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_expect/target/lib/ppx_expect/runtime -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_hash/target/lib/ppx_hash/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_here/target/lib/ppx_here/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_inline_test/target/lib/ppx_inline_test/config -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_inline_test/target/lib/ppx_inline_test/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_log/target/lib/ppx_log/syntax -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_log/target/lib/ppx_log/types -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_module_timer/target/lib/ppx_module_timer/runtime -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_sexp_conv/target/lib/ppx_sexp_conv/runtime-lib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_stable_witness/target/lib/ppx_stable_witness/runtime -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_stable_witness/target/lib/ppx_stable_witness/stable_witness -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppx_string/target/lib/ppx_string/runtime -I /home/opam/biotk.0.3/_build/_private/default/.pkg/ppxlib/target/lib/ppxlib/print_diff -I /home/opam/biotk.0.3/_build/_private/default/.pkg/sexplib/target/lib/sexplib -I /home/opam/biotk.0.3/_build/_private/default/.pkg/sexplib/target/lib/sexplib/unix -I /home/opam/biotk.0.3/_build/_private/default/.pkg/sexplib0/target/lib/sexplib0 -I /home/opam/biotk.0.3/_build/_private/default/.pkg/spawn/target/lib/spawn -I /home/opam/biotk.0.3/_build/_private/default/.pkg/splittable_random/target/lib/splittable_random -I /home/opam/biotk.0.3/_build/_private/default/.pkg/stdio/target/lib/stdio -I /home/opam/biotk.0.3/_build/_private/default/.pkg/time_now/target/lib/time_now -I /home/opam/biotk.0.3/_build/_private/default/.pkg/typerep/target/lib/typerep -I /home/opam/biotk.0.3/_build/_private/default/.pkg/variantslib/target/lib/variantslib -I ../../core_unix/src -I ../../error_checking_mutex/src -I ../../ocaml_c_utils/src -I ../../signal_unix/src -o bigstring_unix_stubs.o -c bigstring_unix_stubs.c)
In file included from /home/opam/.cache/dune/toolchains/ocaml-compiler.5.3.0-23da502d9f7a35404ba47aaa0ec40e91/target/lib/ocaml/caml/io.h:28,
from bigstring_unix_stubs.c:316:
/home/opam/.cache/dune/toolchains/ocaml-compiler.5.3.0-23da502d9f7a35404ba47aaa0ec40e91/target/lib/ocaml/caml/platform.h: In function 'caml_plat_latch_is_released':
/home/opam/.cache/dune/toolchains/ocaml-compiler.5.3.0-23da502d9f7a35404ba47aaa0ec40e91/target/lib/ocaml/caml/platform.h:222:10: error: implicit declaration of function 'atomic_load_acquire' [-Wimplicit-function-declaration]
222 | return atomic_load_acquire(&latch->value) == Latch_released;
| ^~~~~~~~~~~~~~~~~~~
/home/opam/.cache/dune/toolchains/ocaml-compiler.5.3.0-23da502d9f7a35404ba47aaa0ec40e91/target/lib/ocaml/caml/platform.h: In function 'caml_plat_latch_set':
/home/opam/.cache/dune/toolchains/ocaml-compiler.5.3.0-23da502d9f7a35404ba47aaa0ec40e91/target/lib/ocaml/caml/platform.h:230:3: error: implicit declaration of function 'atomic_store_release'; did you mean 'atomic_store_explicit'? [-Wimplicit-function-declaration]
230 | atomic_store_release(&latch->value, Latch_unreleased);
| ^~~~~~~~~~~~~~~~~~~~
| atomic_store_explicit
"/usr/bin/env" "bash" "-c" "cd $HOME && opam source biotk.0.3 && cd biotk.0.3 && opam install ./ --depext-only --with-test && echo '(lang dune 3.17)
(lock_dir
(repositories overlay default ))
(repository
(name default)
(url "git+https://github.com/ocaml/opam-repository.git"))
' > dune-workspace && PATH=$HOME/.local/bin:$PATH dune pkg lock && PATH=$HOME/.local/bin:$PATH dune build" failed with exit status 1
Failed: Build failed
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